GEOS-Chem 14.5.1: Difference between revisions

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== What's new in this version ==
== What's new in this version ==


=== Updates that will NOT affect full-chemistry benchmark simulations ===
=== Updates that will not affect fullchem benchmark simulations ===
 
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|-valign="top"
|-valign="top"
|TBD
|Bug fixes (for consistency) for the carbon simulations in GCClassic and GCHP
|TBD
|Melissa Sulprizio (Harvard)<br>Lizzie Lundgren (Harvard)
|TBD
|Carbon simulation
|TBD
|
*[https://github.com/geoschem/geos-chem/pull/2510 geos-chem PR #2510]
*[https://github.com/geoschem/geos-chem/pull/2554 geos-chem PR #2554]
 
|-valign="top"
|Revert CH4 livestock emissions to EDGAR v7 to address hotspots and lack of seasonality
|Melissa Sulprizio (Harvard)
|Carbon simulation
|
*[https://github.com/geoschem/geos-chem/pull/2626 geos-chem PR #2626]
 
|-valign="top"
|Fix GEOS-Chem 14.5.0 build in CESM by excluding hard dependencies on HEMCO
|Haipeng Lin (Harvard)
|CESM
|
*[https://github.com/geoschem/geos-chem/pull/2542 geos-chem PR #2542]
 
|-valign="top"
|Fixes for running GEOS-Chem 14.5.* in CESM
|Lizzie Lundgren (Harvard)
|CESM
|
*[https://github.com/geoschem/geos-chem/pull/2642 geos-chem PR #2642]
 
|-valign="top"
|Add KPP standalone model to GEOS-Chem (and related updates/fixes)
|Obin Sturm (USC)<br>Bob Yantosca (Harvard)
|Chemistry
|
*[https://github.com/geoschem/GCClassic/pull/73 GCClassic PR #73]
*[https://github.com/geoschem/geos-chem/pull/2634 GCClassic PR #79]
*[https://github.com/geoschem/GCHP/pull/463 GCHP PR #463]
*[https://github.com/geoschem/GCHP/pull/464 GCHP PR #464]
*[https://github.com/geoschem/geos-chem/pull/2588 geos-chem PR #2588]
*[https://github.com/geoschem/geos-chem/pull/2617 geos-chem PR #2617]
*[https://github.com/geoschem/geos-chem/pull/2634 geos-chem PR #2634]
 
|-valign="top"
|Prevent segmentation fault in qfyaml with some compilers
|Lizzie Lundgren (Harvard)
|Compilation
|
*[https://github.com/geoschem/geos-chem/pull/2486 geos-chem PR #2486]
 
|-valign="top"
|Convection fix when using GEOS-FP and GEOS-IT meteoroology
|Yuanjian Zhang (WashU)<br>Lizzie Lundgren (Harvard)
|Convection &<br>Met fields
|
*[https://github.com/geoschem/geos-chem/pull/2523 geos-chem PR #2523]
 
|-valign="top"
|Add counter for SatDiagnPedge collection; Prevent satellite diagnostic counters from being inadvertently reset
|Bob Yantosca (Harvard)
|Diagnostics
|
*[https://github.com/geoschem/geos-chem/pull/2544 geos-chem PR #2544]
*[https://github.com/geoschem/geos-chem/issues/2466 geos-chem #2466]
*[https://github.com/geoschem/geos-chem/issues/2478 geos-chem #2478]
 
|-valign="top"
|Prevent History diagnostic collection duration from being shorter than frequency (in GEOS-Chem Classic)
|Bob Yantosca (Harvard)
|Diagnostics
|
*[https://github.com/geoschem/geos-chem/pull/2593 geos-chem PR #2593]
*[https://github.com/geoschem/geos-chem/issues/2572 geos-chem #2572]
 
|-valign="top"
|Fix trace metals simulation name in config file comments
|Ian Hough (Université Grenoble Alpes)
|Documentation
|
*[https://github.com/geoschem/geos-chem/pull/2560 geos-chem PR #2560]
 
|-valign="top"
|Bug fix: allow uppercase log filename in download_data.py
|Ian Hough (Université Grenoble Alpes)
|Dry-run
|
*[https://github.com/geoschem/geos-chem/pull/2508 geos-chem PR #2508]
 
|-valign="top"
|Add updates to code for GEOS-Chem 14.5.0 to work in the NASA GEOS ESM
|Lizzie Lundgren (Harvard)
|GEOS
|
*[https://github.com/geoschem/geos-chem/pull/2553 geos-chem PR #2553]
*[https://github.com/geoschem/geos-chem/pull/2661 geos-chem PR #2661]
*[https://github.com/geoschem/hemco/pull/300 HEMCO PR #300]
 
|-valign="top"
|Fixes required to compile GCHP adjoint
|Kay Suselj (JPL)
|GCHP
|
*[https://github.com/geoschem/geos-chem/pull/2578 geos-chem PR #2578]
 
|-valign="top"
|Bug fixes for GCHP mass fluxes and upwards mass flux diagnostic (in GCHP repository only)
|Yuanjian Zhang (WashU)
|GCHP
|
*[https://github.com/geoschem/GCHP/pull/456 geos-chem PR #456]
 
|-valign="top"
|Fixed the problem that GCHP cannot read meteorology field from yaml
|Yuanjian Zhang (WashU)
|GCHP
|
*[https://github.com/geoschem/geos-chem/pull/2675 geos-chem PR #2675]
 
|-valign="top"
|Improve log flexibility in HEMCO
|Lizzie Lundgren (Harvard)
|HEMCO
|
*[https://github.com/geoschem/hemco/pull/298 HEMCO PR #298]
*[https://github.com/geoschem/geos-chem/pull/2643 geos-chem PR #2643]
 
|-valign="top"
|Remove duplicate <tt>WD_RetFactor</tt> tag for HgClHO2 entry in <tt>species_database.yml</tt>
|Michael Bertolacci (U. Western Australia)<br>Bob Yantosca (Harvard)
|Hg simulation &<br>Bug fix
|
*[https://github.com/geoschem/geos-chem/pull/2532 geos-chem PR #2532]
 
|-valign="top"
|Australian Hg emissions (2000-2019)
|Stephen MacFarlane (Wollongong)<br>Jenny Fisher (Wollongong)
|Hg simulation
|
*[https://pubs.rsc.org/en/content/articlelanding/2022/em/d2em00019a cf. MacFarlane et al. (2022)]
*Includes emissions from black and brown coal power plants, various metal production/processing sources (Aluminium, gold, copper, lead, etc), waste products, cement production, oil refining and petroleum, chlor alkali plants, and cremation
 
|-valign="top"
|Add comments to GCClassic HISTORY.rc template files advising users not to change BoundaryConditions.frequency
|Bob Yantosca (Harvard)
|Nested-grid simulations
|
*[https://github.com/geoschem/geos-chem/pull/2670 geos-chem PR #2670]
 
|-valign="top"
|Add allocate guards for arrays in pressure_mod
|Joe Wallwork (U. Cambridge)
|Structural
|
*[https://github.com/geoschem/geos-chem/pull/2532 geos-chem PR #2532]
 
|-valign="top"
|Remove excessive prints when using MPI
|Lizzie Lundgren (Harvard)
|Structural
|
*[https://github.com/geoschem/HEMCO/pull/296 HEMCO PR #296]
 
|-valign="top"
|Fix typo in tagCO simulation restart date
|Lizzie Lundgren (Harvard)
|TagCO simulation
|
*[https://github.com/geoschem/geos-chem/pull/2612 geos-chem PR #2612]
*[https://github.com/geoschem/geos-chem/pull/2608 geos-chem PR #2608]
 
|-valign="top"
|Fix error in GC-Classic continous integration tests on Azure Dev Pipelines
|Bob Yantosca (Harvard)
|Testing
|
*[https://github.com/geoschem/GCClassic/pull/77 GCClassic PR #77]
 
|-valign="top"
|Fix bug in GCHP integration test creation due to duplicate "Created " entries in log
|Lizzie Lundgren (Harvard)
|Testing
|
*[https://github.com/geoschem/geos-chem/pull/2615 geos-chem PR #2615]
 
|-valign="top"
|Change default environment files for integration tests on Harvard Cannon from gnu10 to gnu12
|Bob Yantosca (Harvard)
|Testing
|
*[https://github.com/geoschem/geos-chem/pull/2674 geos-chem PR #2674]


|}
|}

Revision as of 21:52, 9 January 2025

Version overview

This version is currently in development

Model GitHub Release Page DOI
GEOS-Chem Classic 14.5.1 TBD TBD
GCHP 14.5.1 TBD TBD

Submodule updates this version

The following submodules were updated to new versions in this release.

Submodule version GitHub release page DOI
GEOS-Chem 14.5.1 TBD TBD
HEMCO 3.10.1 TBD TBD

What's new in this version

Updates that will not affect fullchem benchmark simulations

Feature Contributor(s) Model scope Notes and references
Bug fixes (for consistency) for the carbon simulations in GCClassic and GCHP Melissa Sulprizio (Harvard)
Lizzie Lundgren (Harvard) 		Carbon simulation
Revert CH4 livestock emissions to EDGAR v7 to address hotspots and lack of seasonality Melissa Sulprizio (Harvard) Carbon simulation
Fix GEOS-Chem 14.5.0 build in CESM by excluding hard dependencies on HEMCO Haipeng Lin (Harvard) CESM
Fixes for running GEOS-Chem 14.5.* in CESM Lizzie Lundgren (Harvard) CESM
Add KPP standalone model to GEOS-Chem (and related updates/fixes) Obin Sturm (USC)
Bob Yantosca (Harvard) 		Chemistry
Prevent segmentation fault in qfyaml with some compilers Lizzie Lundgren (Harvard) Compilation
Convection fix when using GEOS-FP and GEOS-IT meteoroology Yuanjian Zhang (WashU)
Lizzie Lundgren (Harvard) 		Convection &
Met fields
Add counter for SatDiagnPedge collection; Prevent satellite diagnostic counters from being inadvertently reset Bob Yantosca (Harvard) Diagnostics
Prevent History diagnostic collection duration from being shorter than frequency (in GEOS-Chem Classic) Bob Yantosca (Harvard) Diagnostics
Fix trace metals simulation name in config file comments Ian Hough (Université Grenoble Alpes) Documentation
Bug fix: allow uppercase log filename in download_data.py Ian Hough (Université Grenoble Alpes) Dry-run
Add updates to code for GEOS-Chem 14.5.0 to work in the NASA GEOS ESM Lizzie Lundgren (Harvard) GEOS
Fixes required to compile GCHP adjoint Kay Suselj (JPL) GCHP
Bug fixes for GCHP mass fluxes and upwards mass flux diagnostic (in GCHP repository only) Yuanjian Zhang (WashU) GCHP
Fixed the problem that GCHP cannot read meteorology field from yaml Yuanjian Zhang (WashU) GCHP
Improve log flexibility in HEMCO Lizzie Lundgren (Harvard) HEMCO
Remove duplicate WD_RetFactor tag for HgClHO2 entry in species_database.yml Michael Bertolacci (U. Western Australia)
Bob Yantosca (Harvard) 		Hg simulation &
Bug fix
Australian Hg emissions (2000-2019) Stephen MacFarlane (Wollongong)
Jenny Fisher (Wollongong) 		Hg simulation
  • cf. MacFarlane et al. (2022)
  • Includes emissions from black and brown coal power plants, various metal production/processing sources (Aluminium, gold, copper, lead, etc), waste products, cement production, oil refining and petroleum, chlor alkali plants, and cremation
Add comments to GCClassic HISTORY.rc template files advising users not to change BoundaryConditions.frequency Bob Yantosca (Harvard) Nested-grid simulations
Add allocate guards for arrays in pressure_mod Joe Wallwork (U. Cambridge) Structural
Remove excessive prints when using MPI Lizzie Lundgren (Harvard) Structural
Fix typo in tagCO simulation restart date Lizzie Lundgren (Harvard) TagCO simulation
Fix error in GC-Classic continous integration tests on Azure Dev Pipelines Bob Yantosca (Harvard) Testing
Fix bug in GCHP integration test creation due to duplicate "Created " entries in log Lizzie Lundgren (Harvard) Testing
Change default environment files for integration tests on Harvard Cannon from gnu10 to gnu12 Bob Yantosca (Harvard) Testing

New data directories

Inventory Simulations What was added? Directory
Australian Hg emissions Hg
  • cf. MacFarlane et al. (2022)
  • Includes emissions from black and brown coal power plants, various metal production/processing sources (Aluminium, gold, copper, lead, etc), waste products, cement production, oil refining and petroleum, chlor alkali plants, and cremation
 HEMCO/MERCURY/v2025-01/MACFARLANE
Australian mask file Hg
  • Corresponding mask file for Australian Hg emissions
 HEMCO/MASKS/v2025-01
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