Difference between revisions of "GEOS-Chem 13.4.0"
From Geos-chem
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== 1-month benchmarks == | == 1-month benchmarks == | ||
− | === 1-month | + | === Model setup for 1-month benchmarks === |
The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-month benchmark simulations. | The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-month benchmark simulations. | ||
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|} | |} | ||
− | === | + | === 1-month fullchem: GEOS-Chem Classic 13.4.0-rc.0 vs 13.3.0 === |
NOTES: | NOTES: | ||
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* [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_13/13.3.0-rc.0/GCClassic/BenchmarkResults/benchmark_categories.yml Species categories] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_13/13.4.0-rc.0/GCClassic/BenchmarkResults/lumped_species.yml lumped species] are defined in YAML files within the GEOS-Chem post-processing software [https://github.com/geoschem/gcpy GCPy]. | * [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_13/13.3.0-rc.0/GCClassic/BenchmarkResults/benchmark_categories.yml Species categories] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_13/13.4.0-rc.0/GCClassic/BenchmarkResults/lumped_species.yml lumped species] are defined in YAML files within the GEOS-Chem post-processing software [https://github.com/geoschem/gcpy GCPy]. | ||
− | ==== 1- | + | TBD |
+ | |||
+ | == Benchmark assessment form == | ||
+ | |||
+ | {| border=1 cellspacing=0 cellpadding=5 | ||
+ | |-bgcolor="#CCCCCC" | ||
+ | !width="325px"|Performance | ||
+ | !width="250px"|GEOS-Chem Classic (rc.0) | ||
+ | !width="250px"|GCHP (rc.0) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Grid resolution: | ||
+ | |4° x 5° | ||
+ | |C48 | ||
+ | |||
+ | |-valign="top" | ||
+ | |# CPUs, nodes: | ||
+ | |48 CPUs<br>1 node (Intel Cascade Lake) | ||
+ | |48 CPUs<br>2 nodes (Intel Cascade Lake) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Wall time: | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[Scalability|CPU time / wall time]]: | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |% of ideal performance: | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Memory: | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Global mean OH:<br>(% change from previous version) | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Methyl chloroform lifetime:<br>(% change from previous version) | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Methane lifetime:<br>(% change from previous version) | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" bgcolor="#cccccc" | ||
+ | !colspan="4"|Details | ||
+ | |||
+ | |-valign="top" | ||
+ | |Species, J-Values, and COLUMN AOD values that changed by 10% or more at the '''surface''': | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Species and J-Values that changed by 10% or more at '''500 hPa''': | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |Species and J-Values that changed by 10% or more in '''zonal mean''': | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" | ||
+ | |'''Emissions''' that changed by 10% or more: | ||
+ | |TBD | ||
+ | |TBD | ||
+ | |||
+ | |-valign="top" bgcolor="#cccccc" | ||
+ | !colspan="4"|Overview | ||
+ | |||
+ | |-valign="top" | ||
+ | |colspan="4"|'''''Below we summarize the notable changes caused by specific updates. Supplementary plots may be viewed at http://ftp.as.harvard.edu/gcgrid/geos-chem/validation/InternalBenchmarks/.''''' | ||
TBD | TBD | ||
+ | |||
+ | |||
+ | '''The following updates introduced differences on the order of numerical noise:''' | ||
+ | |||
+ | TBD | ||
+ | |||
+ | |-bgcolor="#cccccc" | ||
+ | !colspan="4"|Approval | ||
+ | |||
+ | |-valign="top" | ||
+ | |Requires further investigation: | ||
+ | |colspan="4"| | ||
+ | |||
+ | |-valign="top" | ||
+ | |Approved by: | ||
+ | |colspan="4"| | ||
+ | |||
+ | |-valign="top" | ||
+ | |Date of approval: | ||
+ | |colspan="4"| | ||
+ | |||
+ | |} |
Revision as of 21:51, 24 January 2022
This page includes information about GEOS-Chem 13.4.0 (currently under development)
Contents
Version overview
The following items have been added to GEOS-Chem 13.4.0 since the last GEOS-Chem version GEOS-Chem 13.3.4. Also see the following Github pages:
- 13.4.0 milestone for geoschem/geos-chem
- 13.4.0 milestone for geoschem/GCHP
- 3.4.0 milestone for geoschem/HEMCO
Feature | Contributor(s) | Model scope | Notes and references |
---|---|---|---|
Updates that will affect full-chemistry benchmark simulations | |||
Migrating sulfate chemistry into KPP | Mike Long (GCST) Viral Shah (Harvard) Bob Yantosca (GCST) |
Chemistry & Structural |
|
Fix bug in Henry law CALC_HEFF routine in hetchem computations | Viral Shah (Harvard) | Chemistry | |
Bug fix: Remove double-counting of HCl uptake on acidic sea salt | Viral Shah (Harvard) | Chemistry | |
Update surface resistance for ozone deposition to ice/snow | Ryan Pound (York) Shuting Zhai (UW) |
Drydep | |
Use updated definition of PM2.5; Add PM10 diagnostic | Bob Yantosca (GCST) | Diagnostics & Benchmarking |
|
Fix scale factors applied to VOC aircraft emissions in AEIC inventory | Flavio Quadros (TU Delft) Seb Eastham (GCST) |
Emissions & Bug Fix |
|
HEMCO bug fix: restore archiving via manual diagnostics (which had been inadvertently disabled in a prior update) | Melissa Sulprizio (GCST) Bob Yantosca (GCST) |
Emissions | |
Use degassing-only volcano emissions in GEOS-Chem benchmark simulations | Christoph Keller (GMAO) Daniel Jacob (Harvard) |
Emissions & Benchmarking |
|
Add option for driving GEOS-Chem with native GEOS meteorological files | Liam Bindle (GCST) | Structural | |
Updates that will NOT affect full-chemistry benchmark simulations | |||
Updated Hg chemistry in KPP | Viral Shah (Harvard) Colin Thackray (Harvard) Mike Long (GCST) Bob Yantosca (GCST) |
Chemistry |
|
Bug fix: Use REAL*8 precision in for CH3O2 + OH reaction definition in fullchem.eqn | Bob Yantosca (GCST) | Chemistry |
|
Updated Global Inventory of Methane Emissions from Oil/Gas/Coal (GFEI v2) | Tia Scarpelli (U. Edinburgh) | Emissions |
|
Anthropogenic Methane Emission Inventory for Canada | Tia Scarpelli (U. Edinburgh) | Emissions |
|
Use EDGARv6 global anthro emissions for CH4 simulation | Melissa Sulprizio (GCST) | Emissions | |
Updated Rn-222 emissions for TransportTracers simulations | Bo Zhang (NIA) | Emissions |
|
Retire HEMCO extension for CH4 wetland emissions | Melissa Sulprizio (GCST) | Emissions |
|
Updates to enable automated run directory creation | Liam Bindle (GCST) Melissa Sulprizio (GCST) |
Run directory |
|
Bug fix: Allow GEOS-Chem Classic History to archive irregular intervals (e.g. a month and a day) | Bob Yantosca (GCST) | Diagnostics |
|
Updates that will only affect GCHP | |||
Add capability to use mass fluxes in advection | Sebastian Eastham (MIT) Liam Bindle (GCST) |
Advection |
|
Define a GCHP "Default" collection that will archive a small number of commonly-requested diagnostic fields | Liam Bindle (GCST) | Diagnostics | |
Add capability to read native meteorological data files | Liam Bindle (GCST) Bob Yantosca (GCST) |
Structural |
|
New data directories
The following data directories have been added or updated in this version. You will have to download the directories relevant to your simulation.
Inventory | Needed for | What was added? | Directory |
---|---|---|---|
ZHANG_Rn222 | TransportTracers simulations only | Updated Rn222 emissions for TransportTracers simulations. See Bo Zhang et al (2021) | HEMCO/ZHANG_Rn222/v2021-11 |
Updated Hg simulation restart file | Hg simulations only | Sample restart file for the updated Hg mechanism. See Viral Shah et al (2021) | ExtData/GEOSCHEM_RESTARTS/v2021-12 |
Updated TOMAS simulation restart files | TOMAS simulations only | Added HSO3m and SO3mm species to TOMAS restart files | ExtData/GEOSCHEM_RESTARTS/v2021-12 |
1-month benchmarks
Model setup for 1-month benchmarks
The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-month benchmark simulations.
Git tag(s): |
|
Compared to previous benchmark: | 13.3.0 |
Software environment: | gcc 10.2.0 OpenMPI 4.1.0 netcdf-fortran 4.5.3 CMake 3.17.3 ESMF 8.0.1 |
Model resolution: |
|
Meteorology fields: | MERRA-2
|
Initial conditions: | July 1, 2019
|
Benchmark month: | July 2019 |
Emissions setup: | TBD |
Chemistry mechanism: | TBD |
This version will impact: (select all that apply with boldface) |
|
1-month fullchem: GEOS-Chem Classic 13.4.0-rc.0 vs 13.3.0
NOTES:
- Enable PDF bookmarks in the file links to navigate between species. If you do not see bookmarks in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
- See the species database for species definitions and details.
- Species categories and lumped species are defined in YAML files within the GEOS-Chem post-processing software GCPy.
TBD
Benchmark assessment form
Performance | GEOS-Chem Classic (rc.0) | GCHP (rc.0) | ||
---|---|---|---|---|
Grid resolution: | 4° x 5° | C48 | ||
# CPUs, nodes: | 48 CPUs 1 node (Intel Cascade Lake) |
48 CPUs 2 nodes (Intel Cascade Lake) | ||
Wall time: | TBD | TBD | ||
CPU time / wall time: | TBD | TBD | ||
% of ideal performance: | TBD | TBD | ||
Memory: | TBD | TBD | ||
Global mean OH: (% change from previous version) |
TBD | TBD | ||
Methyl chloroform lifetime: (% change from previous version) |
TBD | TBD | ||
Methane lifetime: (% change from previous version) |
TBD | TBD | ||
Details | ||||
Species, J-Values, and COLUMN AOD values that changed by 10% or more at the surface: | TBD | TBD | ||
Species and J-Values that changed by 10% or more at 500 hPa: | TBD | TBD | ||
Species and J-Values that changed by 10% or more in zonal mean: | TBD | TBD | ||
Emissions that changed by 10% or more: | TBD | TBD | ||
Overview | ||||
Below we summarize the notable changes caused by specific updates. Supplementary plots may be viewed at http://ftp.as.harvard.edu/gcgrid/geos-chem/validation/InternalBenchmarks/.
TBD
TBD | ||||
Approval | ||||
Requires further investigation: | ||||
Approved by: | ||||
Date of approval: |