Difference between revisions of "GEOS-Chem 13.2.1"
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'''''[[GEOS-Chem_versions|GEOS-Chem Versions Page]]''''' | '''''[[GEOS-Chem_versions|GEOS-Chem Versions Page]]''''' | ||
− | This page includes information about GEOS-Chem 13.2.1 | + | This page includes information about GEOS-Chem 13.2.1. |
=== Version overview === | === Version overview === | ||
− | The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for [[GEOS-Chem 13.2.0]]. See also the [https://github.com/geoschem/geos-chem/milestone/25 13.2.1 milestone | + | * '''Release date:''' 10 Sep 2021 |
+ | * '''DOI for GEOS-Chem Classic 13.2.1:''' [https://doi.org/10.5281/zenodo.5500717 10.5281/zenodo.5500717] | ||
+ | * '''DOI for GCHP 13.2.1:''' [https://doi.org/10.5281/zenodo.5500718 10.5281/zenodo.5500718] | ||
+ | * '''DOI for HEMCO 3.1.1:''' [https://doi.org/10.5281/zenodo.5504133 10.5281/zenodo.5504133] | ||
+ | |||
+ | The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for [[GEOS-Chem 13.2.0]]. See also the following Github pages: | ||
+ | *[https://github.com/geoschem/geos-chem/milestone/25?closed=1 13.2.1 milestone for geoschem/geos-chem] | ||
+ | *[https://github.com/geoschem/GCHP/milestone/8?closed=1 13.2.1 milestone for geoschem/GCHP] | ||
+ | *[https://github.com/geoschem/HEMCO/milestone/3?closed=1 3.1.1 milestone for geoschem/HEMCO] | ||
{| border=1 cellspacing=0 cellpadding=5 | {| border=1 cellspacing=0 cellpadding=5 | ||
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|-valign="top" | |-valign="top" | ||
!colspan="4" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations | !colspan="4" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations | ||
+ | |||
+ | |-valign="top" | ||
+ | |[https://github.com/geoschem/geos-chem/issues/839 Retire tropchem simulation as an option] | ||
+ | |Melissa Sulprizio (GCST) | ||
+ | |Structural | ||
+ | | | ||
+ | *NOTE: Users can still choose between simulations with 72 or 47 vertical levels | ||
|-valign="top" | |-valign="top" | ||
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|Diagnostics | |Diagnostics | ||
| | | | ||
− | |||
*NOTE: This update will cause JvalO3O1D and JvalO3O3P plots to differ w/r/t previous versions, but will not affect benchmark metrics such as mean OH concentration, MCF lifetime, etc. | *NOTE: This update will cause JvalO3O1D and JvalO3O3P plots to differ w/r/t previous versions, but will not affect benchmark metrics such as mean OH concentration, MCF lifetime, etc. | ||
+ | |||
+ | |-valign="top" | ||
+ | |[https://github.com/geoschem/HEMCO/issues/95 Fix to HEMCO lightning flash rate diagnostic units] | ||
+ | |Lee Murray (Rochester) | ||
+ | |HEMCO<br>Diagnostics | ||
+ | | | ||
+ | *See also [https://github.com/geoschem/HEMCO/pull/96 geoschem/HEMCO #96] | ||
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
|Planeflight diagnostic bug fixes: | |Planeflight diagnostic bug fixes: | ||
− | *Fixed incorrect unit conversions in planeflight diagnostic output | + | *[https://github.com/geoschem/geos-chem/issues/796 Fixed incorrect unit conversions in planeflight diagnostic output] |
− | *Run stops unexpectedly when converting altitude -> pressure | + | *[https://github.com/geoschem/geos-chem/issues/801 Run stops unexpectedly when converting altitude -> pressure] |
|Tess Carter (MIT)<br>Bob Yantosca (GCST) | |Tess Carter (MIT)<br>Bob Yantosca (GCST) | ||
|Diagnostics | |Diagnostics | ||
| | | | ||
− | |||
− | |||
|-valign="top" | |-valign="top" | ||
− | |[https://github.com/geoschem/geos-chem/issues/798 | + | |[https://github.com/geoschem/geos-chem/issues/798 Fixed typo in gc_grid_mod.F90 that caused a regridding error in nested-grid simulations] |
|Lizzie Lundgren (GCST)<br>Bob Yantosca (GCST) | |Lizzie Lundgren (GCST)<br>Bob Yantosca (GCST) | ||
|Grids | |Grids | ||
− | | | + | |Also see: |
− | + | *[https://github.com/geoschem/geos-chem/issues/788 geoschem/geos-chem #788] | |
− | * | + | *[https://github.com/geoschem/geos-chem/issues/786 geoschem/geos-chem #786] |
− | * | + | |
|-valign="top" | |-valign="top" | ||
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|Nested-grid &<br>Testing | |Nested-grid &<br>Testing | ||
| | | | ||
− | + | ||
− | + | |-valign="top" | |
+ | |[https://github.com/geoschem/geos-chem/issues/832 Add WashU data server to GCHP data download script] | ||
+ | |Liam Bindle (WashU) | ||
+ | |Data download | ||
+ | | | ||
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*Also enables downloads from <tt>[http://geoschemdata.wustl.edu http://geoschemdata.wustl.edu]</tt> | *Also enables downloads from <tt>[http://geoschemdata.wustl.edu http://geoschemdata.wustl.edu]</tt> | ||
|Bob Yantosca (GCST) | |Bob Yantosca (GCST) | ||
− | | | + | |Data download |
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− | |||
|-valign="top" | |-valign="top" | ||
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|Diagnostics | |Diagnostics | ||
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− | |||
|-valign="top" | |-valign="top" | ||
− | |[https://github.com/geoschem/geos-chem/issues/837 Bug fix: Compute grid box latitude edges properly for nested-grid simulations] | + | |Bug fixes for nested-grid simulations: |
− | *This fixes a bug introduced by the GCAP 2.0 met field updates in 13.1.0 | + | *[https://github.com/geoschem/geos-chem/issues/837 Bug fix: Compute grid box latitude edges properly for nested-grid simulations] |
− | |Bob Yantosca (GCST) | + | **This fixes a bug introduced by the GCAP 2.0 met field updates in 13.1.0 |
− | | | + | *[https://github.com/geoschem/geos-chem/issues/840 In TPCORE_NESTED, set <tt>iord_bg=iord</tt> and <tt>jord_bg=jord</tt>] |
+ | |Bob Yantosca (GCST)<br>Eloise Marais (UCL) | ||
+ | |Nested Grids | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Bug fixes for Hg simulation: | ||
+ | *[https://github.com/geoschem/geos-chem/issues/847 Now zero geogenic Hg emissions if LAnthroHgOnly flag is turned on] | ||
+ | *[https://github.com/geoschem/geos-chem/issues/879 Fix small negative values in Streets Hg emissions file] | ||
+ | |Harriet Gounia (Wollongong)<br>Jenny Fisher (Wollongong)<br>Bob Yantosca (GCST)<br>Colin Thackray (Harvard) | ||
+ | |Hg simulation | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Run directory updates for GEOS-Chem in GEOS | ||
+ | |Christoph Keller (GMAO)<br>Lizzie Lundgren (GCST) | ||
+ | |GEOS | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |[https://github.com/geoschem/HEMCO/pull/98 Add fixes for generating HEMCO standalone run directories] | ||
+ | |Melissa Sulprizio (GCST) | ||
+ | |HEMCO<br>Bug fix | ||
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|Config files | |Config files | ||
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− | |||
|-valign="top" | |-valign="top" | ||
− | |[https://github.com/GEOS-ESM/MAPL/pull/1002 Bug fix for better error messages if GCHP throws an error during set up | + | |[https://github.com/GEOS-ESM/MAPL/pull/1002 Bug fix for better error messages if GCHP throws an error during set up] |
|Liam Bindle (WashU) | |Liam Bindle (WashU) | ||
|MAPL | |MAPL | ||
− | | | + | |Also see: |
− | * | + | *[https://github.com/geoschem/MAPL/pull/13 geoschem/MAPL #13] |
− | *See [https://github.com/geoschem/MAPL/pull/ | + | |
+ | |-valign="top" | ||
+ | |[https://github.com/GEOS-ESM/MAPL/pull/962 NetCDF read errors now print an error message that includes the offending file's path and a description of the error] | ||
+ | |Liam Bindle (WashU) | ||
+ | |MAPL | ||
+ | |Also see: | ||
+ | *See [https://github.com/geoschem/MAPL/pull/14 geoschem/MAPL #14] | ||
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|Rundir creation | |Rundir creation | ||
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Latest revision as of 17:12, 13 September 2021
This page includes information about GEOS-Chem 13.2.1.
Version overview
- Release date: 10 Sep 2021
- DOI for GEOS-Chem Classic 13.2.1: 10.5281/zenodo.5500717
- DOI for GCHP 13.2.1: 10.5281/zenodo.5500718
- DOI for HEMCO 3.1.1: 10.5281/zenodo.5504133
The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for GEOS-Chem 13.2.0. See also the following Github pages:
- 13.2.1 milestone for geoschem/geos-chem
- 13.2.1 milestone for geoschem/GCHP
- 3.1.1 milestone for geoschem/HEMCO
Feature | Contributor(s) | Model scope | Notes |
---|---|---|---|
Updates that will affect full-chemistry simulations | |||
Retire tropchem simulation as an option | Melissa Sulprizio (GCST) | Structural |
|
Bug fix: Make sure JvalO3O1D and JValO3O3P diagnostic arrays are zeroed in flexchem_mod.F90 | Haipeng Lin (Harvard) Lizzie Lundgren (GCST)) |
Diagnostics |
|
Fix to HEMCO lightning flash rate diagnostic units | Lee Murray (Rochester) | HEMCO Diagnostics |
|
Updates that will not affect full-chemistry simulations | |||
Planeflight diagnostic bug fixes: | Tess Carter (MIT) Bob Yantosca (GCST) |
Diagnostics | |
Fixed typo in gc_grid_mod.F90 that caused a regridding error in nested-grid simulations | Lizzie Lundgren (GCST) Bob Yantosca (GCST) |
Grids | Also see: |
Enable nested-grid integration testing with the following updates:
Fullchem
CH4 |
Bob Yantosca (GCST) | Nested-grid & Testing |
|
Add WashU data server to GCHP data download script | Liam Bindle (WashU) | Data download | |
Update the download_data.py script to read global settings from a YAML file
|
Bob Yantosca (GCST) | Data download | |
Bug fix: Halt simulation if Restart.frequency does not match Restart.duration in HISTORY.rc (for GEOS-Chem Classic only) | Bethany Sutherland (NCST) Bob Yantosca (GCST) |
Diagnostics | |
Bug fixes for nested-grid simulations:
|
Bob Yantosca (GCST) Eloise Marais (UCL) |
Nested Grids | |
Bug fixes for Hg simulation: | Harriet Gounia (Wollongong) Jenny Fisher (Wollongong) Bob Yantosca (GCST) Colin Thackray (Harvard) |
Hg simulation | |
Run directory updates for GEOS-Chem in GEOS | Christoph Keller (GMAO) Lizzie Lundgren (GCST) |
GEOS | |
Add fixes for generating HEMCO standalone run directories | Melissa Sulprizio (GCST) | HEMCO Bug fix |
|
Updates that will only affect GCHP | |||
Bug fix for vertical scale factors in ExtData.rc | Seb Eastham (MIT) Melissa Sulprizio (GCST) |
Config files | |
Bug fix for better error messages if GCHP throws an error during set up | Liam Bindle (WashU) | MAPL | Also see: |
NetCDF read errors now print an error message that includes the offending file's path and a description of the error | Liam Bindle (WashU) | MAPL | Also see: |
Minor GCHP run directory updates | Lizzie Lundgren (GCST) | Rundir creation |
New data directories
The following data directories have been added or updated in this version. You will have to download the directories relevant to your simulation.
Inventory | Type | What was added? | Directory |
---|---|---|---|
HEMCO/SAMPLE_BCs/v2021-07 | Optional | Sample boundary condition files for testing nested-grid simulations (currently: fullchem, CH4) | HEMCO/SAMPLE_BCs/v2021-07 |