Difference between revisions of "GEOS-Chem Nested Model"

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All users interested in the GEOS-Chem regional air quality simulations (e.g. nested-grid, GEOS-Chem/CMAQ linkages, etc.) are encouraged to subscribe to the regional air quality email list (click on the link in the [[#Contact information|contact information section]] below).
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This page provides information for users interested in the GEOS-Chem nested grid simulations.
  
 
== Contact information ==
 
== Contact information ==
  
 
{| border=1 cellspacing=0 cellpadding=5
 
{| border=1 cellspacing=0 cellpadding=5
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|-valign="top"
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|'''Regional Air Quality Working Group Co-Chairs'''
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!width="300px" bgcolor="#CCCCCC"|Nested Model Scientists
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|[http://env.tsinghua.edu.cn/Eng/people/PeopleShow.asp?id=108&mn_id=15603&classname=Associate+Professor&uppage=%2FEng%2Fpeople%2Findexlist%2Easp Yuxuan Wang] and [http://www.geosciences.unl.edu/~jwang/ Jun Wang]
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|width="600px"|
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*[http://www.uh.edu/nsm/earth-atmospheric/people/faculty/yuxuan-wang/ Yuxuan Wang] (GitHub: [https://github.com/yxw246 @yxw246])
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|'''Regional Air Quality Working Group email list'''
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*[http://www.atmos.pku.edu.cn/lzhang/ Lin Zhang]
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|<tt>geos-chem-regional@seas.harvard.edu</tt>
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|'''To subscribe to email list'''
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|Send email to [mailto:geos-chem-regional-join@seas.harvard.edu <tt>geos-chem-regional-join@seas.harvard.edu</tt>]
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|-
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|'''To unsubscribe from email list'''
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|Send email to [mailto:geos-chem-regional-leave@seas.harvard.edu <tt>geos-chem-regional-leave@seas.harvard.edu</tt>]
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|}
 
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|[mailto:lschifer@atmos.colostate.edu Luke Schiferl]
 
|[mailto:lschifer@atmos.colostate.edu Luke Schiferl]
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|University of Wollongong
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|Nested grid for Australia
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|L'Oréal-UNESCO
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|[mailto:jennyf@uow.edu.au Jenny Fisher]
 
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|Harvard
 
|Harvard
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|Application to SEAC4RS aircraft campaign in Southeast Asia
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|Variability of HCHO Over the Southeastern United States Observed from Space
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| NASA AQAST
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|[mailto:leizhu@fas.harvard.edu Lei Zhu]
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|-
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|UNL
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|GEOS-Chem Satellite Simulator for future sensors
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|NASA
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|[mailto:jwang7@unl.edu Jun Wang]
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|Harvard, York, CSU
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|Develop 0.5&deg; x 0.67&deg; grid for continental Africa (Eloise) and 0.25&deg; x 0.3125&deg; grid for West Africa (Mat, Eleanor, Daven)
 
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|Jenny Fisher, Patrick Kim, Lin Zhang
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|[mailto:emarais@seas.harvard.edu Eloise Marais], [mailto:mat.evans@york.ac.uk Mat Evans], [mailto:erm552@york.ac.uk Eleanor Morris] [mailto:daven.henze@colorado.edu Daven Henze]
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|Purdue
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|Develop 0.5&deg; x 0.67&deg; grid for the Arctic
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|[mailto:tan80@purdue.edu Zeli Tan]
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|-
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|Peking University
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|Regional ozone and PM pollution over Asia; Develop 0.25 x 0.3125 degree simulation in the adjoint model
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|
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|[mailto:zhanglg@pku.edu.cn Lin Zhang]
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|University of York
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|Evaluation of the GC European grid for AQ applications
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|[mailto:mat.evans@york.ac.uk Mat Evans] [mailto:tg706@york.ac.uk Tim Garstin]
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|US EPA
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|Develop Boundary Conditions for USA Regional Chemical Transport Models for 2015 and 2016
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|[mailto:Henderson.Barron@epa.gov Barron H. Henderson]
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|Dalhousie U.
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|Develop stretched grid for GCHP
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|[mailto:liam.bindle@dal.ca Liam Bindle]
 
|}
 
|}
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== Recent updates to nested GEOS-Chem ==
 
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=== Fixes to Streets emissions for model years 2005 and earlier ===
 
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'''''This update was tested in the 1-month benchmark simulation [[GEOS-Chem_v9-01-03_benchmark_history#v9-01-03f|v9-01-03f]] and approved on 17 Feb 2012.'''''
 
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We discovered two bugs in the implementation of Streets emissions for the nested model. These will affect all nested simulations at least through v9-01-02 for model years 2005 and earlier.
 
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1. The nested model was using Streets 2000 emissions for years 2001-2005 instead of Streets 2006 emissions, which the global model has been using since v8-03-01. This will be updated in [[GEOS-Chem v9-01-03]].
 
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2. Streets 2000 anthropogenic emissions include NOx, CO, and SO2 from ships, which leads to double-counting of ship emissions as well as improper treatment of NOx emissions. This problem is described in more detail on the [[Ship_emissions#Duplicate_ship_emissions_in_Asia_in_Streets_2000_inventory | ship emissions page]]. This will be updated in [[GEOS-Chem v9-01-03]].
 
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--Jenny Fisher, 1 February 2012
 
  
 
=== Nested-grid capability for offline simulations ===
 
=== Nested-grid capability for offline simulations ===
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|[[CO2 simulation#Nested-grid CO2 simulation|Nested-grid CO2 simulation]]
 
|[[CO2 simulation#Nested-grid CO2 simulation|Nested-grid CO2 simulation]]
 
|Yuxuan Wang (Tsinghua U.)
 
|Yuxuan Wang (Tsinghua U.)
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|Added to [[GEOS-Chem v9-01-03]]; released 14 Sep 2012
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|Added to [[GEOS-Chem v9-01-03]]
 
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|[[CH4 simulation#Update methane emissions and add capability for North America nested grid|CH4 simulation]] (North America)
 
|[[CH4 simulation#Update methane emissions and add capability for North America nested grid|CH4 simulation]] (North America)
 
|Kevin Wecht (Harvard)
 
|Kevin Wecht (Harvard)
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|Added to [[GEOS-Chem v9-01-03]]; released 14 Sep 2012
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|Added to [[GEOS-Chem v9-01-03]]
 
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|[[Mercury#Nested-grid Hg simulation over North_America|Hg simulation]] (North America)
 
|[[Mercury#Nested-grid Hg simulation over North_America|Hg simulation]] (North America)
 
|Yanxu Zhang (U. Washington)
 
|Yanxu Zhang (U. Washington)
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|Slated for inclusion into [[GEOS-Chem v9-02]]
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|Added to [[GEOS-Chem v9-02]]
 
|}
 
|}
  
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--[[User:Bmy|Bob Y.]] 16:42, 14 September 2012 (EDT)
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== Further reading ==
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== Recent linking tool updates for GEOS-Chem and CMAQ ==
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== On-going Developments ==
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'''[[##lists|1. Modified for Code.v8-02-01]]'''
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1). main.f, add following lines after DO_CHEMISTRY in line 941:
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<pre>
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        ! check STT (yxw) 
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#if  defined( GEOS_5 ) && defined( GRID05x0666 )
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            ! Loop over grid boxes
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!$OMP PARALLEL DO
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!$OMP+DEFAULT( SHARED )
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!$OMP+PRIVATE( I, J, L, N )
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            DO N = 1, N_TRACERS
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            DO L = 1, LLPAR
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            DO J = 1, JJPAR
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            DO I = 1, IIPAR
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              !---------------------------
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              ! Check for Negatives
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              !---------------------------
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              IF ( STT(I,J,L,N) < 0d0 ) THEN
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!$OMP CRITICAL
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                  WRITE( 6, 100 ) I, J, L, N, STT(I,J,L,N)
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                  PRINT*, 'Neg STT after chemistry ' //
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    &                  'SET STT TO BE ZERO'
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                  STT(I,J,L,N) = 0d0
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!$OMP END CRITICAL
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              !---------------------------
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              ! Check for NaN's
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              !---------------------------
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              ELSE IF ( IT_IS_NAN( STT(I,J,L,N) ) ) THEN
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!$OMP CRITICAL
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                  WRITE( 6, 100 ) I, J, L, N, STT(I,J,L,N)
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                  PRINT*, 'NaN STT after chemistry ' //
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    &                  'SET STT TO BE LOWER LEVEL'
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                  STT(I,J,L,N) = STT(I,J,L-1,N)
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!$OMP END CRITICAL
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              !----------------------------
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              ! Check STT's for Infinities
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              !----------------------------
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              ELSE IF ( .not. IT_IS_FINITE( STT(I,J,L,N) ) ) THEN
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!$OMP CRITICAL
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                  WRITE( 6, 100 ) I, J, L, N, STT(I,J,L,N)
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                  PRINT*, 'Inf STT after chemistry ' //
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    &                  'SET STT TO BE LOWER LEVEL'
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                  STT(I,J,L,N) =  STT(I,J,L-1,N)
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!$OMP END CRITICAL           
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              ENDIF
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            ENDDO
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            ENDDO
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            ENDDO
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            ENDDO
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!$OMP END PARALLEL DO
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#endif
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</pre>
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2). main.f, add following lines after ITS_TIME_FOR_DIAG  in line 1021:
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<pre>
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        ! Sometimes STT in the stratosphere can be negative at
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        ! the nested-grid domain edges. Force them to be zero before
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        ! CHECK_STT (yxw)
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#if  defined( GEOS_5 ) && defined( GRID05x0666 )
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            ! Loop over grid boxes
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!$OMP PARALLEL DO
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!$OMP+DEFAULT( SHARED )
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!$OMP+PRIVATE( I, J, L, N )
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            DO N = 1, N_TRACERS
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            DO L = 1, LLPAR
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            DO J = 1, JJPAR
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            DO I = 1, IIPAR
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              !---------------------------
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              ! Check for Negatives
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              !---------------------------
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              IF ( STT(I,J,L,N) < 0d0 ) THEN
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!$OMP CRITICAL
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                  WRITE( 6, 100 ) I, J, L, N, STT(I,J,L,N)
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                  PRINT*, 'Neg STT after dynamics step ' //
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    &            'SET STT TO BE ZERO'
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                  STT(I,J,L,N) = 0d0
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!$OMP END CRITICAL
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              ENDIF
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            ENDDO
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            ENDDO
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            ENDDO
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            ENDDO
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!$OMP END PARALLEL DO
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100  FORMAT( ' STT(',i3,',',i3,',',i3,',',i3,') = ', f13.6 )
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#endif
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</pre>
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--[[User:Yuxuan|Wang]],[[User:Dan|Chen]], 05:13, 25 June 2009 (EDT)
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--[[User:Aaron van Donkelaar], March 4, 2010
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== How to run the 0.5x0.667 nested-grid for GEOS-5 ==
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We have moved this discussion to the following wiki pages:
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#[[GEOS-Chem nested grid simulations]]  
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*[[GEOS-Chem nested grid simulations]]  
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#[[Setting up GEOS-Chem nested grid simulations]]
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*[[Setting_up_GEOS-Chem_nested_grid_simulations#GEOS-Chem_12.4.0_and_later|Setting up nested grid simulations in GEOS-Chem 12.4.0 and later]]
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*[[Setting_up_GEOS-Chem_nested_grid_simulations#GEOS-Chem_12.3.2_and_earlier|Setting up nested grid simulations in GEOS-Chem 12.3.2 and earlier]]
  
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--[[User:Bmy|Bob Y.]] 14:07, 15 November 2010 (EST)
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== Two-way coupling between global and nested GEOS-Chem models ==
  
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== About linking tools ==
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For those who are interested in two-way coupling between global and nested GEOS-Chem models, including setups, see [[Two-way coupling between global and nested GEOS-Chem models]]
  
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TBD
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--[[User:jackylinq|Jintai Lin]] 22:15, 23 February 2018 (BJT)

Revision as of 15:31, 7 August 2020

This page provides information for users interested in the GEOS-Chem nested grid simulations.

Contact information

Nested Model Scientists

Current Regional Working Group Projects (Please add yours!)

User Group Description Funding Contact Person
Tsinghua Nested-grid GEOS-Chem model development; Regional air quality over East Asia and interactions with the globe N/A Yuxuan Wang
SNU Regional PM simulations over East Asia Ministry of Environment in Korea Rokjin Park
US EPA N/A Rob Pinder
U. Tennessee N/A Joshua Fu
Nat'l Obs. Athens N/A Anna Protonotariou
U. L'Aquila Buondary conditions to CHIMERE model over Europe, focus on Saharan dust transport. ASI (Italian Space Agency) Gabriele Curci
Georgia Tech. N/A Tao Zeng
U. Toronto N/A Jane Liu
Peking University Regional air quality in East Asia, Inversion of trace gas emissions using satellite products N/A May Fu
Dalhousie U. Surface PM2.5 retrieval using satellite products N/A Aaron van Donkelaar
Dalhousie U. Nested aerosol microphysics (TOMAS). NOx/ultrafine aerosol concentration relationships. Topographic influence on microphysics N/A Jeffrey Pierce
SUNY-Albany Regional particle formation, evolution, and properties: Nested-grid GEOS-Chem (with APM) simulations and comparisons with measurements Fangqun Yu
U. Edinburgh Quantify the impact of boreal biomass burning outflow on tropospheric chemistry over the North Atlantic: Nested grid simulations and evaluation with ground-based, aircraft, and satellite observations Mark Parrington
Emory University Improving MISR Aerosol retrieval with GEOS-Chem simulated aerosol composition NASA Yang Liu
Peking University Carbonaceous aerosols in China May Fu
Peking University Two-way nesting model for GESO-Chem and impacts on regional air quality and long-range transport Jintai Lin
CSU Investigation of inorganic aerosol and role of NH3 during CalNex Luke Schiferl
University of Wollongong Nested grid for Australia L'Oréal-UNESCO Jenny Fisher
Harvard Variability of HCHO Over the Southeastern United States Observed from Space NASA AQAST Lei Zhu
UNL GEOS-Chem Satellite Simulator for future sensors NASA Jun Wang
Harvard, York, CSU Develop 0.5° x 0.67° grid for continental Africa (Eloise) and 0.25° x 0.3125° grid for West Africa (Mat, Eleanor, Daven) Eloise Marais, Mat Evans, Eleanor Morris Daven Henze
Purdue Develop 0.5° x 0.67° grid for the Arctic Zeli Tan
Peking University Regional ozone and PM pollution over Asia; Develop 0.25 x 0.3125 degree simulation in the adjoint model Lin Zhang
University of York Evaluation of the GC European grid for AQ applications Mat Evans Tim Garstin
US EPA Develop Boundary Conditions for USA Regional Chemical Transport Models for 2015 and 2016 Barron H. Henderson
Dalhousie U. Develop stretched grid for GCHP Liam Bindle

Nested-grid capability for offline simulations

The following offline simulations have been updated for the nested grid:

Simulation Author Status
Nested-grid CO2 simulation Yuxuan Wang (Tsinghua U.) Added to GEOS-Chem v9-01-03
CH4 simulation (North America) Kevin Wecht (Harvard) Added to GEOS-Chem v9-01-03
Hg simulation (North America) Yanxu Zhang (U. Washington) Added to GEOS-Chem v9-02

Further reading

Two-way coupling between global and nested GEOS-Chem models

For those who are interested in two-way coupling between global and nested GEOS-Chem models, including setups, see Two-way coupling between global and nested GEOS-Chem models

--Jintai Lin 22:15, 23 February 2018 (BJT)

Retrieved from "https://wiki.seas.harvard.edu/geos-chem/index.php?title=GEOS-Chem_Nested_Model&oldid=47628"