Difference between revisions of "Benchmark/GEOS-Chem 12.5.0"
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!width="200px"|Submitted by | !width="200px"|Submitted by | ||
− | |- | + | |-valign="top" |
− | !colspan=" | + | !colspan="4" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations |
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− | |[[ | + | |[[Stratospheric_chemistry#Bug_fix:_make_sure_stratospheric_BrY_concentrations_are_read_properly_each_month|Bug fix: make sure stratospheric BrY concentrations are read properly each month]] |
− | | | + | |Lyatt Jaeglé (U. Washington) |
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− | |[[ | + | |[[GEOS-Chem_12#Retire_obsolete_emission_inventories|Retire obsolete emission inventories]] |
− | | | + | |Eloise Marais (Leicester)<br>[[Emissions and Deposition Working Group]] |
|-valign="top" | |-valign="top" | ||
− | | | + | |Fixes for GFED4 emissions, including: |
− | | | + | *Change the HEMCO cycling flag so that the model crashes if it doesn't find the right GFED year |
+ | *Remove the 27% scaling of POG to POA and emit 1:1 instead | ||
+ | |Sidhant Pai (MIT) | ||
|-valign="top" | |-valign="top" | ||
− | |[[ | + | |[[GEOS-Chem_12#Corrections_for_CFCs_in_the_chemistry_mechanism|Corrections for CFCs in the chemistry mechanism]] |
− | | | + | |Xuan Wang (Harvard) |
+ | |Bug fix | ||
+ | | | ||
|-valign="top" | |-valign="top" | ||
− | |[[ | + | |[[GEOS-Chem_12#Fix_typo_in_CLD_PARAMS_routine_in_gckpp_HetRates.F90|Fix typo in CLD_PARAMS routine in gckpp_HetRates.F90]] |
− | | | + | |Stephen Steenrod (NASA GMAO) |
|-valign="top" | |-valign="top" | ||
− | + | !colspan="4" bgcolor="#CCFFFF"|Updates that will NOT affect full-chemistry simulations | |
− | + | ||
− | |- | + | |-valign="top" |
− | |[[ | + | |[[List_of_diagnostics_archived_to_netCDF_format#Sample_HISTORY.rc_diagnostic_input_file|Enable GEOS-Chem "Classic" netCDF (History) diagnostics to be subsetted vertically and horizontally]] |
− | | | + | |Bob Yantosca (GCST) |
− | + | ||
− | + | ||
− | + | ||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem_12#Enable_accurate_cloud_pH_diagnostic_calculation|Enable accurate cloud pH diagnostic calculation via post-processing]] | ||
+ | |Jonathan Moch (Harvard) | ||
|-valign="top" | |-valign="top" | ||
− | | | + | !colspan="4" bgcolor="#CCFFFF"|Updates that will only affect GCHP |
− | + | ||
|-valign="top" | |-valign="top" | ||
− | | | + | |Update GCHP to use MAPL v1.0.0 and ESMF v8.0.0 beta snapshot 28 |
− | | | + | |Lizzie Lundgren (GCST) |
− | + | ||
|} | |} | ||
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|Performance statistics: | |Performance statistics: | ||
− | | | + | |qqq |
*Compiled with ifort 17.0.4 | *Compiled with ifort 17.0.4 | ||
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | *Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | ||
− | *Wall time: | + | *Wall time: TBD |
− | *[[Scalability|CPU time / wall time]]: | + | *[[Scalability|CPU time / wall time]]: TBD |
− | *% of ideal performance: | + | *% of ideal performance: TBD |
− | *Memory: | + | *Memory: TBD |
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|Compared to previous benchmark: | |Compared to previous benchmark: | ||
− | |[[GEOS-Chem_12#12. | + | |[[GEOS-Chem_12#12.4.0|12.4.0]] |
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|This update will impact:<br>(select all that apply with '''boldface''') | |This update will impact:<br>(select all that apply with '''boldface''') | ||
− | |Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, '''Emissions''', Photolysis, Chemistry, Other (please specify): | + | |Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, '''Emissions''', Photolysis, '''Chemistry''', Other (please specify): '''Diagnostics''' |
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|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
− | | | + | |TBD |
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|Global mean OH from log file (% change): | |Global mean OH from log file (% change): | ||
− | |12. | + | |12.6185673606414 x 10<sup>5</sup> molec/cm<sup>3</sup> (0.91%) |
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− | |At the SURFACE, list all species | + | |At the SURFACE, list all species with <tt>|max(fractional difference)| > 0.1</tt>: |
− | | | + | | |
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|Comments on SURFACE differences: | |Comments on SURFACE differences: | ||
− | | | + | |TBD |
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− | |In the ZONAL MEAN differences, list all species | + | |In the ZONAL MEAN differences, list all species <tt>|max(fractional difference)| > 0.1</tt>: |
− | | | + | | |
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|Comments on ZONAL MEAN differences: | |Comments on ZONAL MEAN differences: | ||
− | | | + | |TBD |
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− | |In the EMISSIONS maps, list all species | + | |In the EMISSIONS maps, list all species with with <tt>|max(fractional difference)| > 0.1</tt>: |
− | | | + | |TBD |
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|Comments on EMISSIONS differences: | |Comments on EMISSIONS differences: | ||
− | | | + | |TBD |
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|Requires further investigation: | |Requires further investigation: | ||
− | | | + | |TBD |
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Revision as of 14:50, 2 July 2019
File:Page is under construction.jpg This page includes information about all benchmark simulations for GEOS-Chem 12.5.0.
Contents
GEOS-Chem Classic 1-month benchmark
Benchmark plots
These benchmarks were primarily made with GCPy. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.
Category1 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols | sfc | 500hPa | full column | stratosphere | sfc | AOD |
Bromine | sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen | sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
ROy | sfc | 500hPa | full column | stratosphere | -- | |
Sulfur | sfc | 500hPa | full column | stratosphere | sfc | |
Emissions by HEMCO category |
Total,
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emissions tables | ||||
Plots still created by GAMAP | ||||||
J-values | maps | differences | ratios | -- | -- | |
Budget | -- | -- | -- | -- | -- | Ox and CO budgets |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
NOTES:
- Category and lumped species definitions are simple to adjust. Updating them requires only editing the json files.
- All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
Benchmark assessment form
Description | |||||||||||||||||||||||||||||||||
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New features added into GEOS-Chem |
| ||||||||||||||||||||||||||||||||
Version, resolution, met fields used: | GEOS-FP (72L), 4x5, July 2016 | ||||||||||||||||||||||||||||||||
1-month benchmark finished on: | Fri May 24 06:51:03 EDT 2019 | ||||||||||||||||||||||||||||||||
Performance statistics: | qqq
| ||||||||||||||||||||||||||||||||
Compared to previous benchmark: | 12.4.0 | ||||||||||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): Diagnostics | ||||||||||||||||||||||||||||||||
Unit test results may be viewed at: | TBD | ||||||||||||||||||||||||||||||||
Metrics | |||||||||||||||||||||||||||||||||
Global mean OH from log file (% change): | 12.6185673606414 x 105 molec/cm3 (0.91%) | ||||||||||||||||||||||||||||||||
Methyl chloroform lifetime (% change): | 4.8037 years (-2.92%) | ||||||||||||||||||||||||||||||||
Methane lifetime (% change): | 8.0807 years (-3.09%) | ||||||||||||||||||||||||||||||||
max(fractional difference)| > 0.1: | |||||||||||||||||||||||||||||||||
Comments on SURFACE differences: | TBD | ||||||||||||||||||||||||||||||||
At 500 hPa, list all species that changed by 10% or more: | NO, O3, ALK4, ISOP, HNO3, H2O2, RCHO, MVK, MACR, NPMN, R4N2, PRPE, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, TOLU, XYLE, LIMO, TSOG0, ASOG1, ASOG2, ASOG3, ASOA1, ASOA3, SOAP, GLYX, HPALD, DHDN, ETHLN, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAME, LVOC, ISN1OG, ISN1OA, MONITS, HONIT, IONITA, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 | ||||||||||||||||||||||||||||||||
Comments on 500 hPa differences: |
| ||||||||||||||||||||||||||||||||
max(fractional difference)| > 0.1: | |||||||||||||||||||||||||||||||||
Comments on ZONAL MEAN differences: | TBD | ||||||||||||||||||||||||||||||||
max(fractional difference)| > 0.1: | TBD | ||||||||||||||||||||||||||||||||
Comments on EMISSIONS differences: | TBD | ||||||||||||||||||||||||||||||||
Additional or summary comments: | |||||||||||||||||||||||||||||||||
Approval | |||||||||||||||||||||||||||||||||
Requires further investigation: | TBD | ||||||||||||||||||||||||||||||||
Approved by: | |||||||||||||||||||||||||||||||||
Date of approval: |
GCHP 1-month benchmark
The following sections contain validation plots for GCHP 12.4.0.
Comparison of GCHP versions
This table contains plots comparing GCHP 12.3.2 (Ref) and GCHP 12.4.0 (Dev) for a 1-month simulation.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | full column | |
Aerosols | sfc | 500hPa | full column | stratosphere | full column | Column AOD |
Bromine | sfc | 500hPa | full column | stratosphere | full column | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | full column | |
Nitrogen | sfc | 500hPa | full column | stratosphere | full column | |
Primary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Sulfur | sfc | 500hPa | full column | stratosphere | full column | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emission totals |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
Comparison of GCHP and GEOS-Chem Classic
This table contains plots comparing GEOS-Chem Classic 12.4.0 (Ref) against GCHP 12.4.0 (Dev) for a 1-month simulation.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | full column | |
Aerosols | sfc | 500hPa | full column | stratosphere | full column | Column AOD |
Bromine | sfc | 500hPa | full column | stratosphere | full column | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | full column | |
Nitrogen | sfc | 500hPa | full column | stratosphere | full column | |
Primary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Sulfur | sfc | 500hPa | full column | stratosphere | full column | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emission totals |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
GCHP and GEOS-Chem Classic difference of differences
This table contains plots comparing the difference [GCHP 12.4.0 - GCHP 12.3.2] against the difference [GC Classic 12.4.0 - GC Classic 12.3.0], taken from 1-month benchmark simulations.
Category1 | Plots2 | |||
---|---|---|---|---|
Level Map | Zonal Mean | |||
Primary | sfc | 500hPa | full column | stratosphere |
Aerosols | sfc | 500hPa | full column | stratosphere |
Bromine | sfc | 500hPa | full column | stratosphere |
Chlorine | sfc | 500hPa | full column | stratosphere |
Iodine | sfc | 500hPa | full column | stratosphere |
Nitrogen | sfc | 500hPa | full column | stratosphere |
Primary Organics | sfc | 500hPa | full column | stratosphere |
Secondary Organics | sfc | 500hPa | full column | stratosphere |
Sulfur | sfc | 500hPa | full column | stratosphere |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
NOTES:
- At present, we have only created the diff-of-diffs plots for species concentration. This can be extended to other categories in the future.