Difference between revisions of "GEOS-FP"

Revision as of 14:47, 8 August 2013

NOTE: The GEOS-FP ("forward processing"), aka GEOS5-FP, met data product (formerly known as GEOS-5.7.2) is now the active the operational met field product being produced by GMAO. GEOS-FP has now replaced the older GEOS-5.2.0 product.

This page describes some basic information about the new GMAO GEOS-FP data product. For more information, please see:

1. GEOS-FP (v1.0) file specification document (11 Jun 2013)
2. List of GEOS-5.7.2 met fields for GEOS-Chem
3. Details about the implementation of GEOS-5.7.2 into GEOS-Chem
4. GEOS-5 page on the GEOS-Chem wiki
5. Overview of GMAO met data products
6. Evolution of the GEOS-5 system from GEOS-5.2.0/MERRA to GEOS-5.7.2 (aka "Fortuna")

Overview

From the GEOS-FP (v1.0) file specification document (11 Jun 2013), p. 1:

The GEOS-5 FP Atmospheric Data Assimilation System (GEOS-5 ADAS) uses an analysis developed jointly with NOAA’s National Centers for Environmental Prediction (NCEP), which allows the Global Modeling and Assimilation Office (GMAO) to take advantage of the developments at NCEP and the Joint Center for Satellite Data Assimilation (JCSDA). The GEOS-5 AGCM uses the finite-volume dynamics (Lin, 2004) integrated with various physics packages (e.g, Bacmeister et al., 2006), under the Earth System Modeling Framework (ESMF) including the Catchment Land Surface Model (CLSM) (e.g., Koster et al., 2000). The GSI analysis is a three-dimensional variational (3DVar) analysis applied in grid-point space to facilitate the implementation of anisotropic, inhomogeneous covariances (e.g., Wu et al., 2002; Derber et al., 2003). The GSI implementation for GEOS-5 FP incorporates a set of recursive filters that produce approximately Gaussian smoothing kernels and isotropic correlation functions.

The GEOS-5 ADAS is documented in Rienecker et al. (2008). More recent updates to the model are presented in Molod et al. (2011). The GEOS-5 system actively assimilates roughly 2 × 10⁶ observations for each analysis, including about 7.5 × 10⁵ AIRS radiance data. The input stream is roughly twice this volume, but because of the large volume, the data are thinned commensurate with the analysis grid to reduce the computational burden. Data are also rejected from the analysis through quality control procedures designed to detect, for example, the presence of cloud.

To minimize the spurious periodic perturbations of the analysis, GEOS-FP uses the Incremental Analysis Update (IAU) technique developed by Bloom et al. (1996).

The assimilation is performed at a horizontal resolution of 0.3125-degree longitude by 0.25-degree latitude and at 72 levels, extending to 0.01 hPa. All products are generated at the native resolution of the horizontal grid. The majority of data products are time-averaged, but four instantaneous products are also available. Hourly data intervals are used for two-dimensional products, while 3-hourly intervals are used for three-dimensional products. These may be on the model’s native 72-layer vertical grid or at 42 pressure surfaces extending to 0.1 hPa.

--Bob Y. 10:25, 8 August 2013 (EDT)

Acknowledge the source of GEOS-FP data in your publications

If your GEOS-Chem research depends on the GEOS-FP meteorological data producs, please consider adding an acknowledgment to your citations, such as:

The GEOS5-FP data used in this study/project have been provided by the Global Modeling and Assimilation Office (GMAO) at NASA Goddard Space Flight Center.

--Bob Y. 10:46, 8 August 2013 (EDT)

GEOS-FP grid structure

This section describes the horizontal and vertical grids used by the GEOS-FP data products.

Input grids

From the GEOS5-FP (v1.0) file specification document (11 Jun 2013), page 7:

Fields are produced on the model’s native horizontal grid, with a resolution of 5/16 degree longitude by 1/4 degree latitude.

The GEOS5-FP global horizontal grid consists of IMn=1152 points in the longitudinal direction and JMn=721 points in the latitudinal direction. The horizontal native grid origin, associated with variables indexed (i=1, j=1) represents a grid point located at (180°W, 90°S). Latitude and longitude of grid points as a function of their indices (i, j) can be determined by:

     Lon(I) = -180° + [ ΔLon * ( I - 1 ) ],  I = 1, IMN
     Lat(I) =  -90° + [ ΔLat * ( J - 1 ) ],  J = 1, JMN

Where ΔLon = 5/16° = 0.3125° and ΔLat = 1/4° = 0.25°. For example, (i = 577, j = 361) corresponds to a grid point at ( 0, 0).

and also on p. 7:

Gridded products use four different vertical configurations: horizontal-only (can be vertical averages, single level, or surface values), pressure-level, model-level, or model-edge. Horizontal-only data for a given variable appear as 3-dimensional fields (x, y, time), while pressure-level, model-level, or model-edge data appear as 4-dimensional fields (x, y, z, time). In all cases the time dimension spans multiple files, as each file (granule) contains only one time. Pressure-level data is output on the LMp=42 pressure levels shown in Appendix B. The model layers used for GEOS-5 FP products are on a terrain-following hybrid sigma-p coordinate. Model-level data is output on the LM=72 layers shown in the second table of Appendix B. The model-edge products contain fields with LMe = LM + 1 levels representing the layer edges. The pressure at the model top is a fixed constant, PTOP=0.01 hPa. Pressures at model edges should be computed by summing the DELP(I,J,L) starting at PTOP. A representative pressure for the layer can then be obtained from these. In the GEOS-4 eta files, one could compute the pressure on the edges by using the “ak” and “bk” values and the surface pressure. In GEOS-5, the full 3-dimensional pressure variables are explicitly provided through (DELP(I,J,L)) and PTOP. Even though the model-level fields are on a hybrid sigma-p coordinate and their vertical location could be obtained from the “ak-bk” relationship, this may change in future GMAO systems. We thus recommend that users rely on the reported 3D pressure distribution, and not use ones computed from the “ak” and “bk”.

Note that the indexing for the GEOS-5 FP vertical coordinate system is top to bottom, i.e., layer 1 is the top layer of the atmosphere, while layer LM is adjacent to the earth’s surface. The same is true for edge variables, with level 1 being the top of the model’s atmosphere (PTOP), and level LM+1 being the surface.

The table below lists the combination of the horizontal and vertical grids onto which the GEOS-5.7.2 "raw" data products are placed:

Output grids

We foresee the use of GEOS-5.7.2 at the following resolutions:

1. GEOS-Chem 2° x 2.5° grid
2. GEOS-Chem 4° x 5° grid

as well as native resolution for GEOS-Chem nested grid simulations.

--Bob Y. 13:33, 14 April 2011 (EDT)

GEOS-5.7.2 file naming convention

The following description of the naming convention used for GEOS-5.7.2 "raw" data files is paraphrased from Section 5.1 and 5.2 of the GEOS-5.7.2 file specification document, Version 1.2 (04 Aug 2011), pp 12-16:

Standard names

The standard generic complete name for the assimilated GEOS-5 products will appear as follows:

       DAS.config.mode.collection.sys_ver.timestamp.file_ver.nc4

A brief description of the node fields appear below:

DAS

Identifies output as a Data Assimilation System product.For mainstream MERRA data, the following runid's are used:

config

GEOS-5 will run in only one operational configuration. Other configurations may be added later.

1. ops: Operational assimilation, nominally 12 hours behind real-time.

mode

GEOS-5 can run in different modes of operation, but the only mode used to support EOS instrument teams is asm.

1. asm: Assimilation. Uses a combination of atmospheric data analysis and model forecasting to generate a time-series of global atmospheric quantities.

collection

All GEOS-5.7.1 data are organized into file collections that contain fields with common characteristics. These collections are used to make the data more accessible for specific purposes. Fields may appear in more than one collection. Collection names are of the form freq_dims_group_HV, where the four attributes are:

1. freq: time-independent (cnst), instantaneous (instF), or time-average (tavgF), where F indicates the frequency or averaging interval and can be any of the following:
   • 1 = Hourly
   • 3 = 3-Hourly
2. dims: Can be either:
   • 2d for collections with only 2-dimensional fields or
   • 3d for collections with a mix of 2- and 3-dimensional fields.
3. group: A three-letter mnemonic for the type of fields in the collection.
4. HV: Horizontal and Vertical grid.
   • H can be:
     • N: Native (2/3° x 1/2°) horizontal resolution
   • V can be:
     • x: horizontal-only data (surface, single level, etc.) ; dims must be 2D
     • p: pressure-level data (see Appendix D for levels) ; dims must be 3D
     • v: model layer centers (see Appendix D ) dims must be 3D
     • e: model layer edges (see Appendix D ) dims must be 3D

sys_ver

This node defines the GEOS-5 system version that was used to generate this data.

1. GEOS571: GEOSdas 5.7.1 is the current operational version of GEOS-5.

timestamp

This node defines the date and time associated with the data in the file. It has the form yyyymmdd_hhmm for either instantaneous or time-averaged daily files, yyyymm_hhmm for monthly-mean files.

1. yyyy - year string (e.g. , 2002)
2. mm - month string (e.g.., 09 for September)
3. dd - day of the month string
4. hh - hour (UTC)
5. mm - minute

file_ver

This denotes the file version in the form V##. Under normal conditions ## will be 01. In the event of a processing error that requires a re-processing, this number will be incremented to identify the new version of this file.

1. nc4: All files are in NetCDF-4 format, thus the suffix .nc4.

EXAMPLE:

       DAS.ops.asm.inst3_3d_asm_Np.GEOS571.20101201_0000.V01.nc4

This is an example of a GEOS-5.7.2 filename. The collection is instantaneous, three-dimensional, assimilation products, at the native horizontal resolution, interpolated to pressure levels. The file contains data valid at 00 UTC on 01 December 2010.

--Bob Y. 14:36, 4 August 2011 (EDT)

ESDT names

To accommodate EOSDIS toolkit requirements, all GEOS-5 files are associated with a nine-character Earth Science Data Type (ESDT) name. The ESDT, also known as the ShortName, is a short handle for users to access sets of files and takes the form:

       D57TFHVGGG

where

1. T: Time Description:
   • I = Instantaneous
   • T = Time-averaged
   • C = Time-independent
2. F: Frequency
   • 1 = Hourly
   • 3 = 3-Hourly
3. H: Horizontal Resolution
   • N = Native
4. V: Vertical Location
   • X = Two-dimensional
   • P = Pressure
   • V = model layer center
   • E = model layer edge
5. GGG: Group
   • ASM = assimilated state variables (from the IAU corrector, see Appendix A)
   • TDT = tendencies of temperature
   • UDT = tendencies of eastward and northward wind components
   • QDT = tendencies of specific humidity
   • ODT = tendencies of ozone
   • LND = land surface variables
   • FLX = surface turbulent fluxes and related quantities
   • MST = moist processes
   • CLD = cloud-related quantities
   • RAD = radiation TRB = turbulence SLV = single level
   • INT = vertical integrals
   • CHM = chemistry forcing
   • AER = aerosol diagnostics
   • LSF = Large scale flux

--Bob Y. 14:36, 4 August 2011 (EDT)

GEOS-5.7.2 data file collections

The following information is taken from the GEOS-5.7.2 file specification document, Version 1.2 (04 Aug 2011), p. 17:

The GEOS-5 forward processing (FP) product is organized into the 21 collections listed below. These are described in detail in the next sections. All data is on the model’s native horizontal grid, which is a regular latitude-longitude grid with a spacing of 1/4° in latitude and 5/16° in longitude. Horizontal arrays (1152,721) are ordered by longitude first, with the first point at the Dateline and the South Pole, with the inner index increasing eastward. All 3d collections, except the inst3_3d_asm_Np, are on the model’s native, hybrid sigma-p vertical grid. ... Data in the inst3_3d_asm_Np are interpolated to the 42 pressure levels defined above.

As described above, the full file name for the GEOS-5.7.2 data products takes the form:

DAS.ops.asm.CCCCCCCCCCCCCCC.GEOS571.YYYYMMDD_hhmm.V01.nc4

where

1. CCCCCCCCCCCCCCC is the collection name (i.e. one of the entries in the first column of the above table)
2. YYYYMMDD_hhmm is the UTC date (year/month/day, hour:minutes)

--Bob Y. 11:49, 25 October 2011 (EDT)

GEOS-5.7.2 time archiving

Raw data

The GEOS-5.7.2 raw data are archived/averaged at the following times:

1. const: Time-invariant data
2. inst3: 3-hr instantaneous data
   • Times: 00:00, 03:00, 06:00, 09:00, 12:00, 15:00, 18:00, 21:00 GMT
3. tavg1: 1-hour time-averaged data
   • Center times: 00:30, 01:30, 02:30 ... 23:30 GMT
4. tavg3: 3-hour time-averaged data
   • Center times: 01:30, 04:30, 07:30, 10:30, 13:30, 16:30, 19:30, 22:30 GMT

Regridded data

The regridded GEOS-5.7.2 data for GEOS-Chem shall keep the same temporal resolution as the GEOS-5.7.2 raw data, and shall be split among the following data file types:

1. CN (time-invariant data)
   • Filenames GEOS572.20110101.CN.{RESOLUTION}.nc
2. A1 (1-hr time-averaged data)
   • Filenames GEOS572.YYYYMMDD.A1.{RESOLUTION}.nc
3. A3 (3-hr time-averaged data)
   • Filenames
     • GEOS572.YYYYMMDD.A3cld.{RESOLUTION}.nc
     • GEOS572.YYYYMMDD.A3dyn.{RESOLUTION}.nc
     • GEOS572.YYYYMMDD.A3mstC.{RESOLUTION}.nc
     • GEOS572.YYYYMMDD.A3mstE.{RESOLUTION}.nc
4. I3 (6-hr instantaneous data)
   • Filenames GEOS572.20110101.I3.{RESOLUTION}.nc

The CN files shall contain time-invariant data. For convenience we assign a file timestamp of 2011/01/01 at 00:00 GMT.

The I3 files shall contain instantaneous (i.e. snapshot) data at 00:00, 03:00, 06:00, 09:00, 12:00, 15:00, 18:00, 21:00 GMT.

The A1 and A3 files shall use the following bins for time-averaging. (NOTE: The image uses label "GEOS-5.7.1", but the time archiving is the same for GEOS-5.7.2.)

File:GEOS 571 times 800px.jpg

NOTE: GEOS-5.7.2 uses the same timing scheme as MERRA, with the exception that MERRA has 6-hour instantaneous data but GEOS-5.7.2 has 3-hour instantaneous data.

Please also see our List of GEOS-5.7.2 met fields wiki page for detailed information about which fields are stored in each of these file types.

--Bob Y. 10:26, 13 January 2012 (EST)

Implementation into GEOS-Chem

More info to be added later...

--Bob Y. 14:36, 4 August 2011 (EDT)

References

1. GEOS-5.7.2 file specification document, Version 1.2 (04 Aug 2011)
2. Bacmeister, J. T., M. J. Suarez, and F. R. Robertson, 2006. Rain Re-evaporation, Boundary Layer Convection Interactions, and Pacific Rainfall Patterns in an AGCM. J. Atmos. Sci., 63, 3383-3403.
3. Bloom, S., L. Takacs, A. DaSilva, and D. Ledvina, 1996: Data assimilation using incremental analysis updates. Mon. Wea. Rev., 124, 1256-1271.
4. Derber, J. C., R. J. Purser, W.-S. Wu, R. Treadon, M. Pondeca, D. Parrish, and D. Kleist, 2003: Flow-dependent Jb in a global grid-point 3D-Var. Proc. ECMWF annual seminar on recent developments in data assimilation for atmosphere and ocean. Reading, UK, 8-12 Sept. 2003.
5. Koster, R. D., M. J. Suárez, A. Ducharne, M. Stieglitz, and P. Kumar, 2000: A catchment-based approach to modeling land surface processes in a GCM, Part 1, Model Structure. J. Geophys. Res., 105, 24809-24822.
6. Molod, A., L. Takacs, M.J. Suarez, J. Bacmeister, I.S. Song, A. Eichmann, Y. Chang, 2011: The GEOS-5 Atmospheric General Circulation Model: Mean Climate and Development from MERRA to Fortuna. Technical Report Series on Global Modeling and Data Assimilation 104606, v28.
7. Rienecker, M.M., M.J. Suarez, R. Todling, J. Bacmeister, L. Takacs, H.-C. Liu, W. Gu, M. Sienkiewicz, R.D. Koster, R. Gelaro, I. Stajner, and E. Nielsen, 2008: The GEOS-5 Data Assimilation System - Documentation of Versions 5.0.1, 5.1.0, and 5.2.0. Technical Report Series on Global Modeling and Data Assimilation 104606, v27.
8. Wu, W.-S., R.J. Purser and D.F. Parrish, 2002: Three-dimensional variational analysis with spatially inhomogeneous covariances. Mon. Wea. Rev., 130, 2905-2916.

--Bob Y. 14:36, 4 August 2011 (EDT)